In preparation for publication of the phase3 manuscript, we have moved all phase3 BAM files and fastq files from
ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data
to
ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase3/data
The directory structure does not change under data/
Please note that the phase3 variant call VCF files under ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502 stay where they are.